Lipids of Physiological Significance
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HIGH YIELD β˜…β˜…
Lipid Metabolism Β· Unit 15 of 26

Lipids of Physiological Significance

TMU Lecture 13 β€” Xin Liu, PhD Harper's ch. 21 β€” Lipids of Physiologic Significance, pp. 211–221 Opens Module C β€” the vocabulary the next four units assume
01

What a lipid is β˜…β˜…β˜…

Lipids

A heterogeneous group of water-insoluble (hydrophobic) organic molecules that can be extracted from tissues by non-polar solvents.

They are related more by their physical than by their chemical properties, having in common that they are (1) relatively insoluble in water and (2) soluble in non-polar solvents such as ether and chloroform.

Notice what kind of definition that is

Every other class of molecule in this course is defined chemically β€” an amino acid has an Ξ±-carbon, a nucleotide has a base and a sugar. Lipids are defined operationally: by how they behave in a solvent.

That is why the group is so heterogeneous, containing molecules as different as a fatty acid, a steroid ring and a fat-soluble vitamin. If a question asks you to define a lipid, do not try to give a structure β€” give the solubility properties. That is the definition.

Main functionWhich lipid
Ideal storage moleculesFats (triacylglycerols)
Source of bile salts and steroid hormonesCholesterol
Essential component of cellular membranesPhospholipids
Why lipid biochemistry is clinically unavoidable

Fat is stored in adipose tissue, where it also serves as a thermal insulator; non-polar lipids act as electrical insulators, allowing rapid propagation of depolarisation waves along myelinated nerves. Dietary supplementation with long-chain Ο‰-3 fatty acids is believed to benefit cardiovascular disease, rheumatoid arthritis and dementia.

Harper's states the reason this chapter matters plainly: knowledge of lipid biochemistry is necessary to understand obesity, diabetes mellitus and atherosclerosis β€” three of the commonest conditions you will ever treat.

Test yourself
  • Define a lipid → A heterogeneous group of water-insoluble organic molecules extractable by non-polar solvents β€” defined by physical, not chemical, properties
  • Name the three main functional roles → Fats store energy; cholesterol gives bile salts and steroid hormones; phospholipids build membranes
  • Give two non-metabolic roles of lipids → Thermal insulation in adipose tissue, and electrical insulation allowing saltatory conduction
02

The classification β˜…β˜…β˜…

Lipids are classified as simple or complex. This is a list to learn outright β€” it is the vocabulary the next four units assume.

ClassDefinitionMembers
1 Β· SIMPLE lipidsEsters of fatty acids with various alcoholsFats β€” esters of fatty acids with glycerol (oils are fats in the liquid state)
Waxes β€” esters of fatty acids with higher molecular weight monohydric alcohols
2 Β· COMPLEX lipidsEsters of fatty acids containing groups IN ADDITION TO an alcohol and one or more fatty acidsPhospholipids β€” contain a phosphoric acid residue, frequently with a nitrogen-containing base such as choline. The alcohol is glycerol (glycerophospholipids) or sphingosine (sphingophospholipids)
Glycolipids (glycosphingolipids) β€” contain a fatty acid, sphingosine and carbohydrate
Other β€” sulfolipids, amino lipids, and the lipoproteins
3 Β· PRECURSOR and DERIVED lipidsThe products and building blocksFatty acids, glycerol, steroids, other alcohols, fatty aldehydes, ketone bodies, hydrocarbons, lipid-soluble vitamins and hormones
The whole classification turns on one question

Is there anything in the molecule besides fatty acid and alcohol?

No β†’ simple. Yes β†’ complex, and the extra group names the subclass: a phosphate makes it a phospholipid, a carbohydrate makes it a glycolipid.

And note the sphingosine/glycerol split running through the complex lipids β€” it is the same distinction that will separate glycerophospholipids from sphingomyelin in Β§8.

Test yourself
  • Define a simple lipid → An ester of fatty acids with various alcohols β€” fats (with glycerol) and waxes (with higher monohydric alcohols)
  • Define a complex lipid → An ester of fatty acids containing groups in addition to an alcohol and fatty acids
  • Name the three groups of complex lipid → Phospholipids, glycolipids (glycosphingolipids), and others including lipoproteins
  • Which alcohols appear in phospholipids? → Glycerol (glycerophospholipids) or sphingosine (sphingophospholipids)
03

Fatty acids β˜…β˜…β˜…

Fatty acids in the unesterified form usually contain an even number of carbon atoms, and free fatty acid (FFA) is also a transport form found in plasma. They divide on one criterion: whether they contain a double bond.

TypeDefinitionExamples
SaturatedNo double bonds. Based on acetic acid, with –CH₂– progressively added between the terminal CH₃– and –COOHPalmitic acid (16 C) Β· Stearic acid (18 C)
MonounsaturatedOne double bondPalmitoleic 16:1;9 Β· Oleic 18:1;9
Polyunsaturated (PUFA)Two or more double bondsLinoleic 18:2;9,12 Β· Linolenic 18:3;9,12,15 Β· Arachidonic acid

The two numbering systems β€” you need both

SystemCounts fromExample
Ξ” (delta)The carboxyl groupLinoleic acid = 18:2; Ξ”9,12 β€” eighteen carbons, two double bonds, at positions 9 and 12 counting from the –COOH
ω (omega)The methyl carbonω-3, ω-6 — the position of the first double bond counting from the far end
Why two systems, and why the second one is the clinical one

The Ξ” system tells a chemist where the double bonds are. The Ο‰ system tells a physiologist something more useful: mammals cannot introduce double bonds beyond carbon 9 counting from the carboxyl end, so the Ο‰-position is fixed at synthesis and is conserved through every subsequent elongation and desaturation.

That is why nutrition talks about Ο‰-3 and Ο‰-6 and never about Ξ”-anything. The Ο‰ number identifies the family a fatty acid belongs to β€” and therefore whether your body could have made it. Β§5 is that story.

Test yourself
  • How many carbons do palmitic and stearic acid have? → 16 and 18
  • What does 18:2; Ξ”9,12 mean? → Eighteen carbons, two double bonds, at positions 9 and 12 counting from the carboxyl group β€” linoleic acid
  • Where does Ο‰ numbering count from? → The methyl carbon, the far end from the carboxyl group
  • In what form are fatty acids transported in plasma? → As free (unesterified) fatty acid, FFA
Saturated and unsaturated fatty acids β€” note how a cis double bond puts a fixed bend in an otherwise straight chain
Saturated and unsaturated fatty acids β€” note how a cis double bond puts a fixed bend in an otherwise straight chain
Harper's Illustrated Biochemistry, Figure 21–1, p.212
04

cis, trans and melting point β˜…β˜…β˜…

cis and trans configurations

Most naturally occurring unsaturated fatty acids have cis double bonds.

In the cis configuration the acyl chains are on the same side of the double bond; in the trans configuration they are on opposite sides.

Melting point

Melting points are strongly influenced by the length and the degree of unsaturation of the hydrocarbon chain.

Longer chain β†’ higher melting point. More double bonds β†’ LOWER melting point.

⭐ Why one double bond changes everything β€” the geometry answer
Explain why unsaturated fats are liquid at room temperature and saturated fats are solid.
Because of shape. The carbon chains of saturated fatty acids form a zigzag pattern when extended β€” straight, so the molecules pack tightly together. Tight packing means strong cumulative van der Waals attraction, and therefore a high melting point: solid.

A cis double bond puts a rigid kink in the chain. Kinked molecules cannot pack closely, the attractive forces are weaker, and the melting point falls: liquid.

This single geometric fact explains the fluidity of your cell membranes, why fish oil pours and butter does not, and why unsaturated fatty acids can be converted to saturated fatty acids through hydrogenation β€” the industrial process that hardens oils.
Harper's ch.21, p.213 Β· TMU Lecture 13 pp.20, 32
Trans fats β€” and why they are worse than saturated fats

A trans double bond does not kink the chain; the molecule stays nearly straight, so it behaves like a saturated fatty acid while still technically being unsaturated. Trans fatty acids arise as a by-product of partial hydrogenation.

Trans fatty acids are associated with elevated risk of cardiovascular disease. The named example on your slides is elaidic acid, 18:1;Ξ”9 trans β€” the trans isomer of oleic acid, identical in formula and opposite in effect.

Test yourself
  • Which configuration is found in most natural unsaturated fatty acids? → cis
  • What two features determine melting point? → Chain length and degree of unsaturation
  • Why do double bonds lower the melting point? → A cis double bond kinks the chain, preventing tight packing
  • Name a trans fatty acid and its risk → Elaidic acid (18:1;Ξ”9 trans) β€” trans fats are associated with elevated cardiovascular risk
  • How are unsaturated fatty acids converted to saturated? → By hydrogenation
Geometric isomerism of Ξ”9,10-unsaturated fatty acids: the cis form (oleic acid) is kinked, the trans form (elaidic acid) is almost as straight as a saturated chain β€” which is why trans fats behave like saturated fats
Geometric isomerism of Ξ”9,10-unsaturated fatty acids: the cis form (oleic acid) is kinked, the trans form (elaidic acid) is almost as straight as a saturated chain β€” which is why trans fats behave like saturated fats
Harper's Illustrated Biochemistry, Figure 21–6, p.215
05

Essential fatty acids β˜…β˜…

Essential fatty acids

Fatty acids that cannot be synthesised by the body and must therefore be supplied in the diet.

The reason is a synthetic limitation: mammals cannot introduce double bonds beyond carbon 9 of the chain, so the Ο‰-3 and Ο‰-6 families cannot be made de novo.

Essential fatty acidFamilyLeads to
Linoleic acid β€” 18:2; Ξ”9,12Ο‰-6Arachidonic acid, and hence the eicosanoids of Β§6
Ξ±-Linolenic acid β€” 18:3; Ξ”9,12,15Ο‰-3The long-chain Ο‰-3 fatty acids of fish oil
Follow the chain and you have the clinical relevance

Linoleic acid is essential β†’ it makes arachidonic acid β†’ arachidonic acid makes prostaglandins, thromboxanes and leukotrienes β†’ those mediate inflammation, platelet aggregation and bronchoconstriction.

So a dietary requirement at one end of the chain becomes, at the other end, the reason aspirin works. Β§6 is the middle of that chain.

Test yourself
  • Why are some fatty acids essential? → Mammals cannot introduce double bonds beyond carbon 9, so the Ο‰-3 and Ο‰-6 families cannot be synthesised
  • Name the two essential fatty acids → Linoleic acid (Ο‰-6) and Ξ±-linolenic acid (Ο‰-3)
  • Which essential fatty acid gives rise to arachidonic acid? → Linoleic acid
06

Eicosanoids β˜…β˜…β˜…

Eicosanoids

Very potent, short-lived chemical signals derived from eicosa- (20-carbon) polyunsaturated fatty acids β€” principally arachidonic acid.

They comprise the prostanoids (prostaglandins PG, prostacyclins PGI and thromboxanes TX), the leukotrienes (LT) and the lipoxins (LX).

ClassStructureActions
Prostaglandins (PG)Formed by cyclisation of the centre of the carbon chain of a 20-carbon PUFA to form a cyclopentane ringLocal hormones, existing in virtually every mammalian tissue. A wide variety of effects: inflammation, smooth muscle contraction, sodium and water retention, platelet aggregation, gastric secretion
Thromboxanes (TX)The cyclopentane ring is interrupted with an oxygen atom β€” an oxane ringTXAβ‚‚, produced in platelets, causes arteriole contraction and platelet aggregation
Leukotrienes (LT)Formed via the lipoxygenase pathway; characterised by three conjugated double bonds (lipoxins have four)Involved in allergic reactions, chemotaxis of white blood cells, inflammation. Cause bronchoconstriction and play a part in asthma
Two naming conventions, and both are decodable

The subscript number β€” PG₁, PGβ‚‚, PG₃ β€” records which of the three eicosanoic fatty acids the compound came from, and therefore the number of double bonds in the side chains.

The letter β€” PGE, PGF β€” records the substituents on the ring. Harper's gives the worked example: the β€œE” type has a keto group in position 9, whereas the β€œF” type has a hydroxyl group there.

So PGEβ‚‚ is not a code to memorise. It reads: a prostaglandin, with a keto group at position 9, derived from arachidonic acid.

Where the whole of anti-inflammatory pharmacology sits

Prostaglandins mediate inflammation and gastric secretion; TXAβ‚‚ mediates platelet aggregation; leukotrienes mediate bronchoconstriction in asthma.

Read those three lines as three drug classes. Blocking prostaglandin synthesis gives you an anti-inflammatory that also causes gastric ulceration β€” because the same pathway does both jobs. Blocking thromboxane gives you an antiplatelet drug. Blocking leukotrienes gives you an asthma drug. The side effects are not accidents; they are the pathway.

Test yourself
  • Define eicosanoids → Very potent, short-lived chemical signals derived from 20-carbon polyunsaturated fatty acids, chiefly arachidonic acid
  • Name the three main classes → Prostaglandins (with prostacyclins and thromboxanes), leukotrienes, lipoxins
  • What ring does a prostaglandin have, and a thromboxane? → A cyclopentane ring; in thromboxanes it is interrupted by an oxygen β€” an oxane ring
  • What does TXAβ‚‚ do? → Produced in platelets; causes arteriole contraction and platelet aggregation
  • What do leukotrienes do? → Allergic reactions, chemotaxis of white cells, inflammation, bronchoconstriction β€” a role in asthma
Prostaglandin Eβ‚‚ β€” note the cyclopentane ring, the mark of a prostaglandin
Prostaglandin Eβ‚‚ β€” note the cyclopentane ring, the mark of a prostaglandin
Harper's Illustrated Biochemistry, Figure 21–3, p.214
Leukotriene Aβ‚„ β€” no ring, three conjugated double bonds
Leukotriene Aβ‚„ β€” no ring, three conjugated double bonds
Harper's Illustrated Biochemistry, Figure 21–5, p.214
07

Triacylglycerols β˜…β˜…

Vertebrates store triacylglycerols as lipid droplets in adipocytes. The question worth asking is why fat rather than carbohydrate β€” and there are two distinct answers.

AdvantageExplanation
1 Β· More energy per gramThe carbon atoms of fatty acids are more REDUCED than those of sugars, so their oxidation yields more energy
2 Β· No water of hydrationThe organism does not have to carry the extra weight of water hydration, as it does with polysaccharides
The second reason is the bigger one, and it is worth feeling the scale

Glycogen is stored hydrated β€” roughly two grams of water per gram of glycogen. Fat is stored essentially dry.

So the advantage is not merely that fat is more reduced; it is that fat is more reduced and weighs a third of what the equivalent glycogen store would weigh once its water is counted. An animal storing its energy reserve as glycogen could not move.

Recall from Unit 12 that liver glycogen is exhausted in 12–18 hours. Fat stores last weeks. That difference in timescale is entirely a difference in storage chemistry.

Test yourself
  • Where are triacylglycerols stored? → As lipid droplets in adipocytes
  • Give the two advantages of fat over carbohydrate as a fuel store → The carbons are more reduced, so oxidation yields more energy; and no water of hydration must be carried
08

Phospholipids β˜…β˜…β˜…

Phospholipids

Lipids containing, in addition to fatty acids and an alcohol, a phosphoric acid residue β€” frequently with nitrogen-containing bases such as choline.

Glycerophospholipids β€” the alcohol is glycerol.
Sphingophospholipids β€” the alcohol is sphingosine, which contains an amino group.

FunctionDetail
1The major component of cellular membranes
2They store some unsaturated fatty acids β€” including the arachidonic acid released to make eicosanoids
Surfactant and respiratory distress syndrome

The major component of lung surfactant is phospholipid, especially phosphatidylcholine. Lack of surfactant production in the lungs of infants causes respiratory distress syndrome.

Surfactant works because a phospholipid is amphipathic (Β§9): it sits at the air–water interface of the alveolus with its tails in the air and its heads in the fluid, lowering surface tension so the alveolus does not collapse on expiration. A premature infant without it has to reinflate every alveolus with every breath.

This is the single most clinically important sentence in the unit β€” and note that it follows directly from the physical chemistry in the next section, not from anything specific to lungs.

Test yourself
  • Define a phospholipid → A lipid containing, in addition to fatty acids and an alcohol, a phosphoric acid residue, frequently with a nitrogen-containing base
  • Distinguish glycerophospholipids from sphingophospholipids → The alcohol is glycerol, or sphingosine
  • Give two functions of phospholipids → The major component of cellular membranes; storage of some unsaturated fatty acids
  • What is the major component of lung surfactant? → Phospholipid, especially phosphatidylcholine β€” its lack causes infant respiratory distress syndrome
The phosphatidylcholine family β€” a glycerol backbone, two fatty acyl chains, and a phosphate bearing a polar head group
The phosphatidylcholine family β€” a glycerol backbone, two fatty acyl chains, and a phosphate bearing a polar head group
Harper's Illustrated Biochemistry, Figure 21–10, p.216
09

Amphipathicity β˜…β˜…

Amphipathic

Having both hydrophobic and hydrophilic groups in the same molecule.

Fatty acids are amphipathic and form spherical micelles. The same property, in phospholipids, sphingolipids and cholesterol, enables them to form the basic structure of biological membranes.

One property, and almost every structure in this module

An amphipathic molecule in water has a problem it must solve: one end wants to be in the water and the other cannot be. Every solution to that problem is a structure you already know.

β€’ Tails inward, heads out, in a ball β†’ a micelle.
β€’ Two sheets, tails facing tails β†’ a bilayer, i.e. a membrane.
β€’ A shell of amphipathic lipid around a droplet of neutral fat β†’ a lipoprotein (Unit 18).
β€’ A film at an air–water interface β†’ surfactant (Β§8).

Four structures, one physical principle. When you meet the lipoprotein in Unit 18, you will already know why its surface carries the phospholipid and its core carries the triacylglycerol.

Test yourself
  • Define amphipathic → Having both hydrophobic and hydrophilic groups in the same molecule
  • What do fatty acids form in water? → Spherical micelles
  • Which lipids form the basic structure of membranes? → Phospholipids, sphingolipids and cholesterol β€” all amphipathic
How amphipathic lipids orient themselves in water: bilayers, micelles, liposomes and the lipoprotein surface β€” all the same principle, polar faces out
How amphipathic lipids orient themselves in water: bilayers, micelles, liposomes and the lipoprotein surface β€” all the same principle, polar faces out
Harper's Illustrated Biochemistry, Figure 21–25, p.221
Cholesterol β€” the four fused rings, the 3-hydroxyl that makes it amphipathic, and the hydrocarbon tail
Cholesterol β€” the four fused rings, the 3-hydroxyl that makes it amphipathic, and the hydrocarbon tail
Harper's Illustrated Biochemistry, Figure 21–20, p.219
10

Revision layer

This unit is vocabulary, and the vocabulary is assumed by the next four. Note that β€œapolipoproteins” and β€œlipoproteins” are both proven Section I terms β€” they are defined in Unit 18, but the amphipathicity that explains them is here.

The classification

DefinitionMembers
SimpleEsters of fatty acids with alcoholsFats (glycerol) Β· Waxes (higher monohydric alcohols)
ComplexContain groups in addition to alcohol and fatty acidsPhospholipids (phosphate) Β· Glycolipids (sphingosine + carbohydrate) Β· Lipoproteins
Precursor / derivedBuilding blocks and productsFatty acids, glycerol, steroids, ketone bodies, fat-soluble vitamins, hormones

Fatty acids to know

NameNotationNote
Palmitic16:0Saturated
Stearic18:0Saturated
Palmitoleic16:1; Ξ”9Monounsaturated
Oleic18:1; Ξ”9Monounsaturated
Elaidic18:1; Ξ”9 transThe trans isomer of oleic β€” cardiovascular risk
Linoleic18:2; Ξ”9,12ESSENTIAL, Ο‰-6 β†’ arachidonic acid
Ξ±-Linolenic18:3; Ξ”9,12,15ESSENTIAL, Ο‰-3
Arachidonic20:4The eicosanoid precursor

Definitions from this unit β€” Section I material

TermDefinition
LipidsA heterogeneous group of water-insoluble (hydrophobic) organic molecules that can be extracted from tissues by non-polar solvents; related more by their physical than their chemical properties
Simple lipidAn ester of fatty acids with various alcohols β€” fats (with glycerol) and waxes (with higher molecular weight monohydric alcohols)
Complex lipidAn ester of fatty acids containing groups in addition to an alcohol and one or more fatty acids β€” phospholipids, glycolipids and others including lipoproteins
PhospholipidA lipid containing, in addition to fatty acids and an alcohol, a phosphoric acid residue, frequently with a nitrogen-containing base such as choline; the alcohol is glycerol (glycerophospholipids) or sphingosine (sphingophospholipids)
Essential fatty acidA fatty acid that cannot be synthesised by the body and must be supplied in the diet, because mammals cannot introduce double bonds beyond carbon 9 β€” linoleic (Ο‰-6) and Ξ±-linolenic (Ο‰-3) acid
EicosanoidsVery potent, short-lived chemical signals derived from 20-carbon polyunsaturated fatty acids, chiefly arachidonic acid; comprising the prostanoids (prostaglandins, prostacyclins and thromboxanes), leukotrienes and lipoxins
AmphipathicHaving both hydrophobic and hydrophilic groups in the same molecule β€” the property that allows fatty acids to form micelles and phospholipids, sphingolipids and cholesterol to form biological membranes
Final check β€” can you do these cold?
  • Define a lipid, and explain why the definition is physical rather than chemical
  • Give the full simple/complex/derived classification with members
  • Explain both numbering systems and decode 18:2; Ξ”9,12
  • Explain in terms of packing why unsaturation lowers melting point
  • Name the two essential fatty acids and say why they are essential
  • Define eicosanoids and give the actions of PG, TX and LT
  • Give the two reasons fat is a better store than carbohydrate
  • Explain surfactant, and link it to amphipathicity