📋 Comparison Tables
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📋 Comparison Tables

Section V · 30% · 5 questions × 6 marks  ·  50 questions from the units built so far
Section V is worth 30 marks and, in both papers, is five comparison tables and nothing else — innate vs adaptive, papain vs pepsin, cellular vs humoral, primary vs secondary, and the functions of B cells. All five were identical across the two years. Answer them as tables: the instruction on the paper asks for single words in several rows, and prose earns no extra credit.
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Unit 1 · Overview of Immunology
1 Fill in the table to compare the characteristics of innate immunity and adaptive immunity. (Describe with “Yes”/“no” and “quick”/“slow”.) 6 marks
Innate immunityAdaptive immunity
If need antigenNoYes
ResponseQuickSlow
SpecificNoYes
Immune memoryNoYes

The instruction is explicit about the answer format — single words, not sentences. Write “no / quick / no / no” and “yes / slow / yes / yes” and the six marks are banked in under a minute. Padding it with prose gains nothing and costs time you need for Section V's later questions.

Marking guide: 1½ marks per row, or 0.75 per cell across 8 cells. Full marks require both columns of every row. Examiner expects the literal words asked for.
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2 Fill in the table to compare cellular and humoral immune response. 6 marks
Cellular (cell-mediated)Humoral
Mediated byT lymphocytesB lymphocytes and their antibodies
EffectorEffector T cells (CTL, Th)Antibody in blood and secretions
Defends againstIntracellular microbes — viruses, bacteria inside phagocytesExtracellular microbes and their toxins
MechanismLyses infected cells; activates phagocytes harbouring microbesNeutralises infectivity and toxin; targets microbes for elimination
Adoptive transfer byT lymphocytesCell-free serum or plasma
Marking guide: Roughly 1–1.5 marks per row. The two rows that carry most weight are mediated by (T vs B) and defends against (intracellular vs extracellular) — an answer missing either cannot reach full marks.
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3 List the three functions of the immune system, giving for each its normal manifestation and the disease that results when it fails. 6 marks
FunctionNormal manifestationAbnormal manifestation
Immune defenceResists invasion by pathogens; neutralises toxinsHypersensitivity reactions; immunodeficiency diseases
Immune homeostasisRecognises and clears injured, aged and dead cells; tolerance to selfAutoimmune disease
Immune surveillanceRecognises and removes mutant or malignant cellsTumours; persistent viral infection

Note that immune defence has two failure modes in opposite directions — too little gives immunodeficiency, too much gives hypersensitivity. Stating both is what separates a full answer from a partial one.

Marking guide: 2 marks per function: 1 for naming it with its normal role, 1 for the corresponding disease. Full marks on immune defence require both directions of failure.
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Unit 2 · Antigen
4 Compare complete antigen and hapten. 6 marks
Complete antigenHapten
ImmunogenicityYesNo
AntigenicityYesYes
Molecular sizeLargeSmall
ValenceMultivalentMonovalent
Needs a carrier?NoYes, to become immunogenic
ExampleBacterial protein, toxoidPenicillin
Marking guide: 1 mark per row. The two rows that must be present for a pass are immunogenicity and antigenicity — that contrast is the question.
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5 Compare thymus-dependent (TD) and thymus-independent (TI) antigens. 6 marks
TD antigenTI antigen
T-cell helpRequiredNot required
Chemical natureMainly proteinsMainly polysaccharides
Epitope structureA few copies of many different epitopesOne epitope repeated many times
Response typeHumoral and cellularHumoral only
Antibody classesIgM, IgG, IgAIgM only
MemoryYesNo

If there is room, add the clinical pay-off: because TI antigens give no memory and work poorly in infants, the pneumococcal polysaccharide is conjugated to a carrier protein to convert it into a TD antigen.

Marking guide: 1 mark per row. Memory and antibody class are the highest-value rows — they are what the distinction is for.
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6 List the factors that affect the immunogenicity of an antigen. 6 marks

1 · Properties of the antigen — foreignness (the dominant factor); chemical nature (proteins and glycoproteins strongest); molecular weight (>100 kD strong, <10 kD poor); structural complexity; epitope conformation and accessibility; physical form (polymer > monomer, cyclic > linear, particulate > soluble).

2 · The host — genetic background, especially MHC type; age, sex and state of health; infection or immunosuppressive drugs.

3 · Method of administration — dose (a moderate dose is best; extremes induce tolerance); timing of injections; route (intracutaneous > subcutaneous > intravenous > oral); use of an adjuvant.

Marking guide: 2 marks per heading. The three-way structure — antigen, host, administration — is itself worth marks; an unstructured list of factors scores lower even if it contains the same items.
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Unit 3 · Immunoglobulin
7 Fill in the table to compare the differences between papain and pepsin cleaving IgG: cleaving position in IgG · the fragments formed after cleaving · functions of the fragments. 6 marks
PapainPepsin
Cleaving position in IgGN-terminal (amino) side of the inter-heavy-chain disulfide bonds — above themC-terminal (carboxyl) side of the inter-heavy-chain disulfide bonds — below them
Fragments formed2 × Fab + 1 × Fc
Fab = L + VH + CH1; Fc = CH2 + CH3
1 × F(ab′)₂ + pFc′
F(ab′)₂ = two Fab still disulfide-linked
Functions of fragmentsFab binds antigen, valence 1.
Fc: fixes complement, crosses the placenta, binds Fc receptors on cells
F(ab′)₂ binds antigen, valence 2 — can cross-link and agglutinate.
pFc′ has no function

If there is room, add the clinical point: tetanus antitoxin is pepsin-digested so that the immunogenic Fc is removed while the bivalent F(ab′)₂ still neutralises the toxin.

Marking guide: 2 marks per row. The single fact the whole answer hangs on is the cleavage position relative to the inter-heavy-chain disulfide bonds — an answer that only says “papain gives Fab and Fc” without that reference point cannot reach full marks.
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8 Describe the biological functions of immunoglobulin. 6 marks

1 · Mediated by the V region — antigen recognition. Binding is highly specific, one epitope per site, two sites per monomer. The direct consequence is neutralisation of viruses, of Gram-negative bacteria and of toxins — which requires neither complement nor cells.

2 · Mediated by the Fc portion:

Activation of complement — C1q binds CH2 of IgG or CH3 of IgM, triggering the classical pathway; aggregated Ig can trigger the alternative pathway.
Opsonisation — phagocytes bearing FcγR ingest IgG-coated microbes far more efficiently.
ADCC — NK cells and leucocytes bearing FcγR bind IgG on a target cell and lyse it.
Mediating type I hypersensitivity — IgE on mast cells and basophils, cross-linked by allergen, causes degranulation.
Crossing the placenta or mucosa — IgG via placental Fc receptors; sIgA into external secretions.

Marking guide: 1 mark for the V-region/neutralisation half; 1 mark each for the five Fc-mediated functions. The two-part structure (V region vs Fc) is itself expected — an undifferentiated list scores lower.
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9 Compare the biological features of the five classes of immunoglobulin. 6 marks
IgGIgAIgMIgDIgE
% serum Ig~80%10–15%~10%0.2%trace
Formmonomermonomer; dimer as sIgApentamer + J chainmonomermonomer
Half-life20–23 d4–5 d
Key featureonly class crossing the placenta; main antibody of the secondary response; opsonisation, classical complement, ADCCmucosal immunity; transferred in breast milklargest (900 kD, valence 10); first Ig made; natural blood-group antibody; activates classical complementwith IgM forms the BCRtype I hypersensitivity; eosinophil ADCC against parasites
Marking guide: Roughly 1 mark per class plus 1 for the overall structure. The superlatives — most abundant, largest, first, only placental — are what the examiner is actually testing.
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Unit 4 · The Complement System
10 Compare the three pathways of complement activation. 6 marks
ClassicalAlternativeLectin (MBL)
InitiatorAg–Ab immune complex (IgM, IgG1–IgG3)Microbial surfaces — LPS, peptidoglycan, zymosanMannose residues on microbial surfaces
First componentC1qC3MBL
ComponentsC1, C4, C2, C3C3, factors B, D, PMBL, MASP, C4, C2, C3
Antibody neededYesNoNo
IonsCa²⁺, Mg²⁺Mg²⁺Ca²⁺
C3 convertaseC4b2aC3bBbC4b2a
C5 convertaseC4b2a3bC3bBb3bC4b2a3b
Immunity / timingAdaptive; later stageInnate; initial stage, amplification loopInnate; early stage, promotes the other two
Marking guide: Roughly 0.75 per row. The rows that must be right are antibody needed and the two convertase rows — an answer that gets the convertases wrong cannot pass, and writing C4b2b instead of C4b2a is the commonest way to lose them.
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11 Describe the biological functions of complement. 6 marks

① Opsonisation — C3b (and iC3b) coats the microbe and is bound by CR1 (CD35) on phagocytes, greatly increasing ingestion. Quantitatively the most important function.

② Inflammation — the anaphylatoxins C3a, C4a and C5a trigger mast-cell degranulation and increase vascular permeability.

③ ChemotaxisC5a is the most potent chemoattractant for neutrophils and monocytes, and activates them so that CR1-bound microbes are actually ingested.

④ Cell lysis — the MAC (C5b–C9) forms a membrane pore; particularly important against Neisseria.

⑤ Clearance of immune complexes — C3b-tagged complexes bind CR1 on erythrocytes and are carried to liver and spleen.

⑥ Linking innate to adaptive immunity — C3d bound to antigen engages CR2 (CD21) on the B-cell co-receptor, lowering the activation threshold.

Marking guide: 1 mark each for six functions, or 1.5 each for four well-explained ones. Naming the mediator (C3b, C5a, MAC) alongside the function is what separates a full answer from a list.
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12 How is complement activation regulated, and what happens when regulation fails? 6 marks
RegulatorActionDisease if deficient
C1 inhibitor (C1INH)Serpin — inactivates C1r and C1s, limiting C4 and C2 cleavageHereditary angioedema
DAF (CD55)Displaces Bb and C2a from C3b and C4b, decaying the C3 convertasePNH
MCP (CD46)Cofactor for factor IAtypical haemolytic uraemic syndrome
Factor I (+ factor H)Cleaves C3b to inactive iC3b
CD59 (protectin)Inhibits MAC formation at C8PNH

Two clinical points earn the final marks. In hereditary angioedema the swelling is complement-mediated, not histamine-mediated, so antihistamines and adrenaline are ineffective. In PNH, DAF and CD59 are both GPI-anchored, so a single anchor defect removes both at once and the patient's own alternative pathway lyses their red cells.

Marking guide: 1 mark per regulator with its action; up to 2 for the disease correlations. Explaining why PNH loses two regulators together (shared GPI anchor) is the discriminating detail.
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Unit 5 · Cytokines
13 Describe the general characteristics (attributes) of cytokines. 6 marks

Secretion. A brief, self-limited event — cytokines are not stored preformed but synthesised and immediately secreted.

Synthesis. Different cell types make the same cytokine (IL-6 from macrophages, endothelium and T cells); one cell type makes many cytokines.

Action. Through high-affinity receptors on target cells, in three modes: autocrine (same cell), paracrine (nearby cell) and endocrine (at a distance).

AttributeMeaning
PleiotropismOne cytokine, diverse effects on different target cells
RedundancySeveral cytokines, the same effect
SynergyTwo cytokines together exceed the sum of their separate effects
AntagonismTwo cytokines oppose each other
Cascade inductionOne cytokine induces others, which mediate its effect

Cytokines do not possess specificity — stating this explicitly is worth a mark, and it is what MCQ Q15 tests.

Marking guide: 1 mark per attribute (5) plus 1 for the modes of action or the non-storage/receptor points. Explicitly noting the absence of specificity distinguishes a complete answer.
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14 Compare Th1 and Th2 cells. 6 marks
Th1Th2
Cytokines producedIL-2, IFN-γ, TNF — not IL-4IL-4, IL-5, IL-6, IL-10, IL-13 — not IL-2 or IFN-γ
Induced byIL-12 and IFN-γIL-4
PromotesCellular immunityHumoral immunity
Main effectActivates macrophages for intracellular killing; promotes NK function and CTL proliferation and differentiationActivates B cells for proliferation, differentiation and antibody production; activates eosinophils
Antibody class helpedIgG2aIgG1 and IgE
HypersensitivityType IVType I
AlsoCertain autoimmune diseasesDefence against parasites

Worth adding: each lineage's cytokines inhibit the other lineage (IFN-γ suppresses Th2; IL-4 and IL-10 suppress Th1), so the commitment is self-reinforcing.

Marking guide: 1 mark per row. The cytokine row and the cellular-vs-humoral row carry the most weight — an answer that reverses them cannot pass, and it is exactly the error the True/False question is designed to catch.
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15 Classify the cytokines and give the principal biological activity of each class. 6 marks
ClassActivityMembers
Interleukin (IL)Made by leukocytes, acting on leukocytesIL-1 to IL-39
Interferon (IFN)Interferes with viral infection and replicationType I: IFN-α, IFN-β · Type II: IFN-γ
TNFNecrosis of tumour cells; promotes inflammationTNF-α, TNF-β (lymphotoxin)
CSFStimulates colony formation in bone marrowGM-CSF, M-CSF, G-CSF
Growth factorStimulates cell growth and proliferationNGF, EGF, VEGF, FGF, PDGF
ChemokineStimulates leukocyte movement; regulates migration from blood into tissueCXC, CC, C, CX3C

General activities: innate antibacterial — IL-1, TNF, IL-12; innate antiviral — IFN-α, IFN-β; adaptive — IL-2, IL-4, IL-5, IL-6, IFN-γ; haematopoiesis — CSF, IL-7, EPO, IL-6, IL-11, TPO.

Marking guide: 1 mark per class named with its activity. Adding the four general-activity groupings secures full marks.
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Unit 6 · CDs and CAMs
16 What are CD molecules, and what are they used for? 6 marks

Definition. CD stands for cluster of differentiation — a series of membrane molecules or markers determined by monoclonal antibodies. They are so named because these molecules appear or disappear at different stages of cell differentiation and maturation.

Scale. Numbered CD1–CD247, organised into 13 groups (T cell, B cell, NK cell, platelet, adhesion molecules, and others).

Uses. ① Identifying cell lineage and developmental stage — the basis of immunophenotyping in leukaemia and lymphoma. ② Many CD molecules have defined functions: CD3 transduces the TCR signal; CD4 and CD8 are co-receptors; CD28 receives B7; CD40 receives the B-cell second signal; CD21 is the C3d and EBV receptor; CD16 mediates ADCC.

Marking guide: 2 marks for the definition including the reason for the name, 1 for the numbering/groups, 3 for uses with named examples.
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17 Describe the four families of cell adhesion molecules. 6 marks
FamilyStructureBindsRole
SelectinMembrane glycoproteinsCarbohydrate on mucin-like CAMsInitiates leukocyte–endothelial interaction; L on leukocytes, E on endothelium, P on platelets
Mucin-likeHeavily glycosylated proteinsSelectinsExtended structure presents carbohydrate ligands to selectins
Ig superfamilyContain Ig-like domainsIntegrinsICAM-1, ICAM-2, ICAM-3, VCAM-1; on vascular endothelium
Integrinα/β heterodimersIg-superfamily CAMs and extracellular matrixStrong adhesion

Worth adding: selectin–carbohydrate binding is deliberately weak and rapidly reversible, producing rolling; integrin binding is strong and stable, producing arrest. The two-stage design exists because a firm bond formed at full flow velocity would tear.

Marking guide: 1.5 marks per family. Full marks require naming the members (L/E/P selectins; ICAM/VCAM) and stating which family initiates and which gives strong adhesion.
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18 Describe the general functions of cell adhesion molecules. 6 marks

① Co-receptors and co-stimulators in the immune response. Some CAMs act as co-receptors — CD4 and CD8, which grip MHC and stabilise the contact while the TCR reads peptide. Others act as co-stimulators — CD28, CD80 and CD86 — supplying the second signal for T-cell activation.

② Leukocyte migration and inflammation. Extravasation proceeds in four steps: rolling (selectins binding mucin-like carbohydrate) → activation of integrins by chemokines displayed on the endothelium → firm adhesion (integrins binding ICAM-1 and VCAM-1) → transmigration. Endothelium is licensed for this by TNF-α, which externalises preformed P-selectin.

③ Lymphocyte homing. Mediated by lymphocyte homing receptors (LHR) on the lymphocyte and addressins on the tissue. Naïve T cells home to secondary lymphoid tissue; effector T cells home to mucosal or skin sites according to where they were activated.

Marking guide: 2 marks per function. The migration answer must give the steps in order to earn full credit; naming CD4/CD8 and CD28/B7 secures the first.
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Unit 7 · T Lymphocytes
19 Compare positive and negative selection of T lymphocytes. 6 marks
Positive selectionNegative selection
LocationThymic cortexCortico-medullary junction and medulla
StageDouble-positive (DP)Single-positive (SP)
Presented byThymic epithelial cellsThymic dendritic cells and macrophages
SurviveRecognise self-peptide–MHC with proper affinityCannot recognise, or recognise with low affinity
DieCannot recognise, or recognise with high affinityRecognise with high affinity
ResultSelf-MHC restriction; commitment to CD4 or CD8Self-immune tolerance
Marking guide: 1 mark per row. The result row carries most weight — an answer that does not state restriction vs tolerance cannot reach full marks.
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20 Describe the surface molecules of T lymphocytes and their functions. 6 marks

① TCR–CD3 complex. TCR binds antigen (αβ 95–99%, γδ 1–5%) and is a lineage marker; CD3 transduces the signal through ITAM motifs.

② Co-receptors. CD4 (monomer, 60–65% of αβ T cells) binds the β2 domain of MHC class II and is the HIV gp120 receptor; CD8 (heterodimer, 30–35%) binds the α3 domain of MHC class I. Both increase antigen sensitivity and participate in activation signalling.

③ Co-stimulatory molecules. Positive: CD28 (ligand B7.1/B7.2 — signal 2), ICOS (ligand ICOSL). Negative: CTLA-4 (same B7 ligands, ITIM, inhibitory), PD-1 (ligands PD-L1/PD-L2). Also CD40L (ligand CD40 on B cells/APC), CD2 (ligand LFA-3), LFA-1 (ligand ICAM-1).

④ Mitogen receptors. PHA, Con A, PWM — polyclonal, non-specific activators used in the T-cell transformation test.

Marking guide: 1.5 marks per group. Naming ligands as well as molecules is what separates full marks; the CD28/CTLA-4 contrast is the highest-value single point.
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21 How do cytotoxic T lymphocytes kill their target cells? 6 marks

Characteristics. CTLs are CD8⁺, kill with antigen specificity and MHC class I restriction, and are not injured in the process — so one CTL can kill repeatedly.

① Perforin / granzyme pathway. Perforin, a pore-forming monomer stored in CTL granules, is released and polymerises to form an aqueous channel in the target membrane; the target may die by osmotic swelling. Granzymes enter through these channels, activate caspases and induce apoptosis.

② Fas–FasL pathway. The CTL expresses FasL, which binds Fas on the target cell; this activates caspases and causes apoptosis.

Both pathways converge on apoptosis rather than lysis — which destroys the viral genome and packages the remains for phagocytosis instead of spilling infectious virions into the tissue.

Marking guide: 2 marks for the characteristics, 2 for each pathway. Naming perforin's pore-forming action and granzyme's caspase activation separately is expected.
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Unit 8 · B Lymphocytes
22 Please list the functions of B cells, across: cellular immune response, humoral immune response, infection defence, hypersensitivity mediation, anti-tumour effect and allograft rejection. 6 marks
RoleHow B cells contribute
Cellular immune responseAct as professional APCs — internalise antigen via the BCR, present it as peptide–MHC class II to Th cells, and express B7 to co-stimulate them; secrete regulatory cytokines (IL-6, IL-10, TNF-α)
Humoral immune responseThe central role: differentiate into plasma cells and secrete specific antibody of the same specificity as the original BCR
Infection defenceAntibody neutralises toxins and viruses, activates complement, and opsonises for phagocytosis; sIgA protects mucosal surfaces and IgG crosses the placenta to protect the newborn
Hypersensitivity mediationAntibody mediates types I, II and III; IgE in particular drives type I
Anti-tumour effectAntitumour antibody supports ADCC and complement-mediated lysis of tumour cells
Allograft rejectionAlloantibody contributes to rejection, particularly hyperacute and antibody-mediated rejection

The examiner supplies the six rows, so the marks are for filling each one — not for an essay. Anchor every row to a mechanism (antibody, presentation, ADCC) rather than a general statement.

Marking guide: 1 mark per row. The humoral and infection-defence rows are the ones that must be right; naming ADCC and alloantibody secures the harder two.
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23 Describe the surface molecules of B lymphocytes and their functions. 6 marks

① BCR complex. Membrane Ig (mIg) binds antigen via VH+VL; Igα (CD79a) / Igβ (CD79b) transduce the signal through ITAM motifs.

② Co-receptor. CD19 / CD21 / CD81 — enhances naïve B-cell responsiveness and helps transduce signal 1. CD21 is CR2, the C3d and EBV receptor.

③ Co-stimulatory molecules. CD40 (ligand CD40L on activated Th cells) delivers the most important second signal; B7-1/B7-2 (CD80/CD86) give signal 2 to T cells via CD28; adhesion molecules ICAM-1 and LFA-1 stabilise the contact.

④ Other molecules. CD19 — B-cell marker and CAR-T target; CD20 — B-cell marker and monoclonal-antibody target; CD22 — ITIM, negatively regulates the co-receptor; CD32 — negatively regulates activation and antibody secretion; mitogen receptors PWM-R, LPS-R, SPA-R.

Marking guide: 1.5 marks per group. Distinguishing CD19/CD20/CD21/CD40 by function rather than listing them is what earns full marks.
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24 Compare B1 and B2 lymphocytes. 6 marks
B1 cellsB2 cells
ClassInnateAdaptive
Proportion / origin5–10%; from fetal liver, self-renewingMajority; appears late in ontogeny
LocationPeritoneal and pleural cavities, intestinal lamina propriaPeripheral lymphoid organs
Antigen spectrumNarrow — mainly TI antigens and autoantigensBroad — mainly TD antigens
T-cell helpNot requiredRequired
Class switching / memoryNone / noneYes / yes
AntibodyLow-affinity, multi-reactive IgM; natural antibody against LPSHigh-affinity, mainly IgG

Note the parallel with γδ T cells and TI antigens: the same innate-lymphocyte signature — narrow repertoire, no help needed, IgM only, no memory — recurs three times across this course.

Marking guide: 1 mark per row. The T-help, class-switching and memory rows together define the innate/adaptive distinction and cannot be omitted.
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Unit 9 · NK and Innate Cells
25 Explain why NK cells kill tumour and virus-infected cells but spare normal host cells. 6 marks

NK cells carry two opposing receptor systems:

Killer activating receptorsKiller inhibitory receptors
ExamplesKIR2DS, KIR3DS; CD94/NKG2C, NKG2D; NCRs (NKp46, NKp30, NKp44)KIR2DL, KIR3DL; CD94/NKG2A
BindNon-class-I-HLA moleculesClass I HLA molecules

On a normal cell, class I HLA is expressed normally, so the inhibitory receptors are engaged and their signal outweighs the activating signal — killing is suppressed.

On an abnormal cell — many tumours, and cells infected by viruses that down-regulate MHC I — class I expression is lost or reduced. The inhibitory signal disappears, the activating receptors (NKG2D and the NCRs) predominate, and the target is killed. This is “missing self” recognition.

NK cells can additionally kill by ADCC: FcγRIII (CD16) binds IgG already coating a target cell.

Significance: a virus that switches off MHC I to escape CD8⁺ CTLs thereby exposes itself to NK cells — the two killers are complementary.

Marking guide: 2 marks for naming both receptor systems and their ligands, 2 for the normal vs abnormal cell comparison, 1 for naming missing-self, 1 for ADCC or the CTL-complementarity point.
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26 Describe the characteristics and functions of macrophages. 6 marks

Origin and distribution. HSC → myeloid progenitor → pre-monocyte → blood monocyte → tissue macrophage. Tissue names: Kupffer cells (liver), mesangial cells (kidney glomerulus), microglia (brain), alveolar macrophages (lung), histiocytes (connective tissue).

Recognition receptors. Non-opsonic (PRR) — mannose receptor, scavenger receptor, Toll-like receptor. Opsonic — FcγR and C3bR/C4bR.

Killing mechanisms. Oxygen-dependent — reactive oxygen intermediates (O₂⁻, OH⁻, H₂O₂, ¹O₂) and reactive nitrogen intermediates (NO). Oxygen-independent — low pH (3.5–4), lysozyme, defensins.

Functions. ① Kill and remove pathogens. ② Kill intracellular bacteria and target cells (tumour cells, virus-infected cells). ③ Participate in and stimulate inflammation. ④ Process and present antigen. ⑤ Immunological regulation.

Marking guide: 1.5 marks per heading. The five functions are the core; naming both receptor classes and both killing systems secures full marks.
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27 What are PRRs and PAMPs, and why is this recognition system effective? 6 marks

PRR — pattern recognition receptors: the receptors expressed by innate immune cells which recognise certain molecular structures owned by pathogens. Families: Toll-like receptors (TLR1–9; LPS, peptidoglycan, viral nucleic acids), C-type lectin receptors (mannose receptor; fungal and mycobacterial carbohydrate), scavenger receptors (CD36), pentraxins (C-reactive protein).

PAMP — pathogen-associated molecular patterns: highly conserved structures expressed by pathogens or their products, absolutely distinct from normal host substances. DAMPs are the equivalent signals released from damaged and dying host cells.

Why it works. PAMPs are conserved because they are essential to the microbe — a bacterium cannot discard its cell wall to evade detection. So a small, germline-encoded set of receptors covers whole classes of pathogen, is available immediately without any prior exposure, and cannot be escaped by mutation as an antigenic epitope can.

Link to adaptive immunity. PRR engagement induces B7 expression on APCs, supplying signal 2 for T-cell activation — Janeway's prediction that innate immunity controls adaptive immunity.

Marking guide: 2 marks for each definition with examples, 2 for the reasoning about conservation and immediacy. The link to signal 2 is the discriminating point.
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Unit 10 · MHC
28 Compare MHC class I and class II molecules. 6 marks
Class IClass II
GenesHLA-A, B, CHLA-DP, DQ, DR
ChainsOne MHC-encoded α chain + β2-microglobulin (not MHC-encoded)α chain and β chain, both MHC-encoded
Peptide-binding cleftα1 + α2α1 + β1
Nature of cleftClosedOpen
Peptide size8–10 aa13–18 aa
Anchor residuesAt both endsDistributed along the length
Co-receptorCD8, at α3CD4, at β2
Expressed onAll nucleated cellsDC, macrophages, B cells, thymic stroma
Presents toCD8⁺ CTLCD4⁺ helper T cell

Memory aid: class I × CD8 = 8 and class II × CD4 = 8.

Marking guide: 0.75 per row. The cleft composition and the distribution rows are the two that the paper actually tests, and neither can be omitted.
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29 Describe the properties of MHC. 6 marks

① Polygeny — several different MHC genes exist (A, B, C; DP, DQ, DR), so each person expresses several different class I and class II molecules.

② Polymorphism — multiple alleles at each locus within the species: HLA-A 303 alleles, HLA-B 559, HLA-C 150, HLA-DRB 440.

③ Co-dominance — both maternal and paternal gene products are expressed in the same cell; there is no allelic exclusion.

④ Haplotype — the particular combination of MHC alleles on a single chromosome, transmitted as a single unit in most cases.

⑤ Linkage disequilibrium — the difference between the observed frequency of an allele combination and that expected from the individual allele frequencies.

Significance: polymorphism lies between individuals rather than within one, so it defends the species — no pathogen can evade every person's MHC. Co-dominance and polygeny widen the peptide repertoire of each individual.

Marking guide: 1 mark per property with a correct definition, plus 1 for the significance.
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30 What are the functions of MHC molecules? 6 marks

① Antigen presentation. MHC molecules bind peptides derived from pathogens and display them to T cells. Class I presents endogenous (cytosolic) peptide to CD8⁺ CTLs; class II presents exogenous (vesicular) peptide to CD4⁺ helper T cells. Because a T-cell receptor recognises antigen only as peptide bound to MHC, this is the sole route by which T cells see antigen at all.

② MHC restriction. The interaction between antigen-presenting cell and T cell is MHC-restricted — a given T cell recognises peptide only in the context of a particular MHC molecule.

③ T-cell differentiation in the thymus. MHC molecules on thymic epithelial cells drive positive selection (conferring self-MHC restriction and committing the cell to CD4 or CD8) and, on thymic DCs and macrophages, negative selection (conferring self-tolerance). MHC therefore does not merely impose restriction — it creates it.

Also: MHC class I is the ligand for NK inhibitory receptors, so its loss triggers missing-self killing; and MHC differences between individuals are the basis of graft rejection.

Marking guide: 2 marks per function. Linking function 3 to positive and negative selection specifically is the discriminating detail.
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Unit 11 · APCs and Processing
31 Compare the class I and class II antigen presentation pathways. 6 marks
Class I pathwayClass II pathway
Antigen sourceEndogenous — synthesised within the cell (viral, tumour protein)Exogenous — taken up from outside (bacteria, cells, protein)
UptakeNone — already in the cytosolEndocytosis
Degraded byProteasomeEndosome / lysosome
TransportTAP, cytosol → rough ERVesicular trafficking
Loaded ontoMHC class IMHC class II
Presented toCD8⁺ T cellsCD4⁺ T cells
Performed byAll nucleated cellsProfessional APCs only
ConsequenceKilling of the presenting cellRecruitment of help / organisation of a response

The organising idea worth stating: the compartment the antigen occupies determines the MHC class, which determines the T-cell subset, which determines the outcome. Cytosolic antigen means the cell itself is compromised, so it is killed; external antigen means the APC is a healthy scout, so help is recruited instead.

Marking guide: 0.75 per row. The source, MHC class and T-cell rows are essential; stating the compartment-determines-outcome logic secures full marks.
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32 Compare immature and mature dendritic cells. 6 marks
Immature DCMature DC
MHC I / II+++++++
Co-stimulatory molecules (B7, ICAM-1, LFA-3)Low levelHigh level
Antigen uptake+++++
Antigen processing+++++
Antigen presentation+++++
Cytokine secretionNot clearIL-12, IL-18, IFN-γ, chemokines
LocationPeripheral tissueSecondary lymphoid organs

The reason for the trade is geographical: a DC must be in peripheral tissue to collect antigen and in a lymph node to present it to naïve T cells. Encountering a pathogen triggers the switch from sampling to reporting.

Marking guide: 1 mark per row. The uptake/presentation reversal is the point of the question and must be explicit.
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33 Compare the three professional antigen-presenting cells. 6 marks
Dendritic cellMacrophageB cell
Antigen uptakePinocytosis +++Phagocytosis, pinocytosis, receptor-mediated endocytosis +++Ig-mediated ++++
MHC expressionConstitutive ++++Inducible — by bacteria and cytokinesConstitutive +++
Co-stimulatory (B7)Constitutive ++++Inducible, − to +++Inducible, − to +++
Antigens presentedPeptides, viral antigens, allergensParticulate; intracellular and extracellular pathogensSoluble antigens, toxins, viruses
LocationWidespreadWidespreadLymphoid tissue, peripheral blood
Activates naïve T cells?YesNoNo

The decisive row is co-stimulation. Only the DC is constitutively equipped with both MHC and B7, so only the DC can supply signal 1 and signal 2 to a naïve T cell — the reason it alone initiates a primary response.

Marking guide: 1 mark per row. Naming Ig-mediated uptake for B cells and constitutive B7 for DCs are the two discriminating details.
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Unit 12 · The Immune Response
34 Fill in the table to compare primary and secondary humoral immune response. 6 marks
Primary responseSecondary response
Immunogen thresholdHighLow
Lag phaseLongShort
Antibody levelLowHigh, produced faster and persisting longer
IgMPredominantPresent but minor
IgGLittlePredominant
Affinity and avidityLowHigh — affinity maturation

If there is room, give the reason in one sentence: the secondary response is mounted by memory B cells, which are already numerous, already class-switched and already affinity-matured. That single fact accounts for every row.

Marking guide: 1 mark per row. The IgM/IgG switch and the affinity row are the two that distinguish a complete answer; naming memory cells as the cause secures full marks.
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35 Describe the phases of the adaptive immune response. 6 marks
PhaseCell-mediated immunityHumoral immunity
① Antigen recognitionAPCs ingest, process and present antigen to naïve T cells, which recognise the peptide–MHC complex via TCR/CD3B cells recognise native antigen directly via the BCR
② Activation, proliferation, differentiationNaïve T cells are activated and differentiate into effector T cells and memory cellsNaïve B cells are activated and differentiate into plasma cells and memory cells
③ EffectorEffector CD4⁺ and CD8⁺ T cells remove the antigen by various mechanismsAntibodies secreted by plasma cells remove the antigen by neutralisation, opsonisation, ADCC and complement activation

Add the requirements: full T-cell activation needs signal 1 + signal 2 + cytokines; full B-cell activation needs BCR signal + CD40/CD40L plus IL-2, IL-4, IL-5 and IL-6. Most events occur in the secondary lymphoid organs.

Marking guide: 1 mark per cell of the table. The phase-1 asymmetry — T cells need an APC, B cells do not — is the point most often missed.
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36 Compare TD and TI antigens in the humoral immune response. 6 marks
TD antigenTI antigen
Chemical traitProteinPolysaccharide
Th helpNeededNot needed
Classes of antibodyIgG (and IgM)IgM only
Class switching+
Anamnestic response+
Memory cells+

TI antigens subdivide: TI-1 carries a mitogen-like structure and acts as a polyclonal B-cell activator at high concentration; TI-2 carries repeated determinants that cross-link the BCR and activate mature B cells specifically.

The explanatory point worth adding: class switching, affinity maturation and memory all occur in the germinal centre, which requires T-cell help — so a TI antigen, bypassing T cells, can access none of them.

Marking guide: 1 mark per row. Distinguishing TI-1 from TI-2, or explaining why no T help means no memory, earns the final marks.
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Unit 13 · Type I Hypersensitivity
37 Describe the mechanism of type I hypersensitivity. 6 marks

Components.Allergens — proteins that selectively activate Th2 and B cells to induce IgE. ② IgE — least abundant serum Ig, does not fix complement, binds FcεRI via CH2 and CH3. ③ Cells — mast cells and basophils (both FcεRI⁺), with eosinophils in the late phase. ④ Mediators.

① Sensitization phase. First allergen exposure activates B cells to form IgE-secreting plasma cells; IgE binds FcεRI on mast cells and basophils, producing sensitized target cells. No symptoms.

② Excitation phase. The allergen re-enters and cross-links the bound IgE, changing the target-cell membrane and triggering degranulation.

③ Effector phase. Preformed histamine and newly formed leukotrienes, PGD₂ and PAF cause smooth-muscle contraction, vasodilation with increased vascular permeability, and mucus secretion — giving rhinitis, asthma, urticaria or anaphylaxis according to site.

Marking guide: 2 marks per phase, or 1.5 per phase plus 1.5 for the components. The cross-linking step is the mechanistic core and must be explicit.
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38 How is type I hypersensitivity detected and treated? 6 marks

Detection.Skin test — small amounts of allergen by intradermal injection or superficial scratching of forearm skin; a wheal and flare >5 × 5 mm at 30 minutes is positive, showing specific IgE on skin mast cells. Advantages: inexpensive, screens many allergens at once. Disadvantage: rarely may induce systemic anaphylactic shock. ② ELISA for serum IgE specific to a given allergen.

Treatment principles. ① Avoid known allergens. ② Inhibit IgE production. ③ Stabilise mast cells to inhibit degranulation. ④ Antagonise active mediators. ⑤ Medication, including:

DesensitizationHyposensitization
MethodSmall doses, short intervals (20–30 min)Small doses, long intervals (5–7 days)
MechanismGradually exhausts the active mediatorsShifts antibody production from IgE to IgG
Marking guide: 2 marks for detection, 2 for the five principles, 2 for the desensitization/hyposensitization contrast — interval and mechanism must both be right.
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39 List the common diseases caused by type I hypersensitivity. 6 marks

Systemic anaphylaxis — a shock-like, often fatal state with onset within minutes, caused by systemic vasodilation and increased permeability. Causes: drugs (penicillin, insulin), animal antiserum antitoxins, and venom from bee, wasp or hornet.

Respiratory. Allergic rhinitis (hay fever) — airborne allergens meet sensitized mast cells in conjunctivae and nasal mucosa; watery exudation, sneezing, coughing. Asthma — the same reaction in the lower respiratory tract; bronchial smooth-muscle contraction and mucus secretion cause airway obstruction and dyspnoea.

Skin. Atopic urticaria (hives) — allergen binds sensitized mast cells in skin, causing swollen red eruptions; also eczema.

Digestive. IgE cross-linking on GI mast cells causes localised smooth-muscle contraction and vasodilation — vomiting, diarrhoea, bellyache.

All share one mechanism; the site of the degranulating mast cells determines the disease. 20–30% of the population is affected by some form.

Marking guide: 1.5 marks per system. Stating that a single mechanism produces different diseases according to site is what lifts a list into an answer.
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Unit 14 · Type II Hypersensitivity
40 Describe the mechanism of type II hypersensitivity. 6 marks

Components. Antibodies IgG and IgM; antigen present on the cell surface; effectors complement, macrophages and NK cells. Blood cells and self tissue cells are the targets.

Sources of the surface antigen. ① Constitutive membrane components (ABO, Rh, HLA). ② Common antigens shared with exogenous antigens (e.g. streptococcal cell wall and cardiac valve). ③ Modified self antigens (chemicals, infections, drugs). ④ Antigens or haptens adsorbed to the cell surface.

Three mechanisms of destruction.

MechanismHow
Complement-mediated lysisIgG/IgM activates the classical pathway; the MAC (C5b–C9) lyses the cell
Opsonised phagocytosisFcγR binds antibody and complement receptors bind C3b on macrophages and neutrophils
ADCCNK cells bind the coating IgG via FcγRIII (CD16) and kill the target

Worth stating: every one of these is a normal antibody effector function working correctly — the pathology lies entirely in the target.

Marking guide: 2 marks for components, 1 for antigen sources, 3 for the three mechanisms (1 each). Naming complement, macrophage and NK cell explicitly answers True/False Q10 at the same time.
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41 Explain the mechanism of haemolytic disease of the newborn caused by Rh incompatibility, and how it is prevented. 6 marks

Sensitisation. An Rh⁻ mother carries an Rh⁺ fetus. Fetal Rh⁺ red cells enter the mother — at delivery of the first baby, or through transfusion or abortion.

Primary response. The mother makes IgM, which cannot cross the placenta, so the first baby is unharmed. But memory cells are formed.

Secondary response. In a subsequent pregnancy with an Rh⁺ fetus, memory cells produce IgG at high titre. IgG crosses the placenta, binds fetal red cells and lyses them.

Consequences. Anaemia (mild to fatal); jaundice; brain damage, because haemoglobin is converted to lipid-soluble bilirubin which accumulates in the brain.

Prevention. Anti-Rh antibody (Rhogam) given to the mother within 72 hours of the first delivery. It binds Rh antigen on fetal red cells and clears them before the mother responds, thereby preventing B-cell activation and memory-cell generation.

Therapy. Intrauterine blood-exchange transfusion (replacing fetal Rh⁺ cells with Rh⁻); blood-exchange transfusion (to remove bilirubin); phototherapy (to break down bilirubin); plasmapheresis (to discard maternal anti-Rh antibody).

Marking guide: 2 marks for the sensitisation and primary/secondary sequence, 1 for the IgM/IgG placental-transfer point, 1 for consequences, 2 for prevention with the correct mechanism and the 72-hour window.
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42 Compare type I and type II hypersensitivity. 6 marks
Type IType II
NameAnaphylactic / immediateCytotoxic / cytolytic
AntibodyIgEIgG and IgM
AntigenSoluble allergenOn a cell surface
Antibody locationOn the mast cell (FcεRI)On the target cell
Effector cellsMast cells, basophils, eosinophilsComplement, macrophages, NK cells
ComplementNot involved — IgE does not fixCentral
TimingMinutesHours
DiseasesAsthma, rhinitis, urticaria, anaphylaxisTransfusion reaction, HDN, haemolytic anaemia, hyperthyroidism

The single most useful contrast: in type I the antibody sits on the effector cell waiting for antigen; in type II it sits on the target cell marking it for destruction.

Marking guide: 0.75 per row. The antibody class and the antibody-location rows are the two that must be right.
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Unit 15 · Hypersensitivity III & IV
43 Explain the mechanism of type III hypersensitivity. 6 marks

Formation and size. Soluble antigen stimulates antibody; immune complexes form. Their fate depends on size:

SmallMedium (≈19S)Large
Complement activation++++++
ClearanceFiltered by glomerulusDeposits; difficult to removeCleared by phagocytes, fast
DamageCauses immune complex disease

Deposition sites. Joint synovium, glomerular basement membrane, choroid plexus — all filter blood under pressure through small vessels.

Injury. Deposited complexes activate complement. C3a, C4a, C5a (anaphylatoxins) degranulate mast cells and increase vascular permeability; C3a, C5a, C5b67 (chemotactic) recruit neutrophils, which release lytic enzymes; C3b activates platelets, giving aggregation and microthrombi. The result is oedema, haemorrhage and tissue damage.

Marking guide: 2 marks for the size rule, 1 for deposition sites, 3 for the complement and neutrophil mechanism. Stating that the neutrophil does the damage is the discriminating point.
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44 Describe type IV hypersensitivity and its common diseases. 6 marks

Properties.Delay of 24–72 hours after the second antigen contact. ② Recruitment of macrophages. ③ No antibody and no complement involved.

Mechanism. Intracellular bacteria, viruses, parasites or chemicals are taken up by APCs; T cells differentiate into effector CD4⁺ Th1 and CD8⁺ CTL plus memory cells. On re-exposure, Th1 cells secrete chemokines (recruiting macrophages), IFN-γ (activating macrophages) and TNF-α/TNF-β (local tissue injury, increased endothelial adhesion molecules); CTLs lyse target cells directly.

Diseases.Infectious DTH — tuberculosis: first infection may give miliary TB, second gives a localised reaction, repeated occurrence gives chronic granuloma. The OT (tuberculin) test shows red induration ~5 mm at 24–48 h; a negative result may mean no exposure or immunodeficiency. ② Contact dermatitis — a hapten (nickel, dye, cosmetics, leather) binds keratin of the cuticle to form the antigen; effector T cells produce local red swelling and blistering.

Note: DTH is an important effector form of cell-mediated immunity — essentially inflammation — and is how intracellular organisms are contained.

Marking guide: 2 marks for the three properties, 2 for the mechanism with named cytokines, 2 for the two disease groups.
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45 Compare the four types of hypersensitivity. 6 marks
Type IType IIType IIIType IV
NameAnaphylactic / immediateCytotoxicImmune complexDelayed (DTH)
MediatorIgEIgG, IgM on cell surfaceImmune complexesT cells
AntigenSoluble allergenCell-surfaceSolubleIntracellular microbes, chemicals
EffectorsMast cells, basophils, eosinophilsComplement, macrophages, NK cellsComplement, neutrophils, plateletsTh1, CTL, macrophages
Th subsetTh2Th1
TimingMinutesHours1–3 weeks24–72 hours
ComplementNoYesYesNo
DiseasesAsthma, rhinitis, anaphylaxisTransfusion reaction, HDNSLE, RA, serum sicknessContact dermatitis, tuberculin reaction

Two questions place any disease: is it antibody or T cell? (T cell, macrophages, granuloma or days of delay → type IV); then where is the antigen? (on a mast cell via IgE → I; fixed on a target cell → II; soluble and forming deposits → III).

Marking guide: 0.75 per row. The mediator and antigen-location rows are essential; the Th subset row answers True/False Q11 at the same time.
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Unit 16 · Immunoassay
46 Describe the methods available for detecting antigen and antibody. 6 marks

Principle. All rest on the specific binding of antigen and antibody. Methods may be qualitative (existence) or quantitative (concentration), and visible or invisible (needing a label).

MethodDetail
AgglutinationInsoluble particulate antigen + specific antibody → visible agglutinates.
Direct (detects antigen) — ABO blood typing.
Indirect (detects antibody) — rheumatoid factor; pregnancy test by indirect agglutination inhibition for hCG
PrecipitationSoluble antigen + antibody. Single immunodiffusion and rocket electrophoresis are quantitative; double immunodiffusion is qualitative
Labelled immunoassayELISA — enzyme conjugated to antibody, substrate gives a colour change; quantitative and sensitive. Also fluorescent, radioisotope and colloidal-gold labels

The organising question for any assay: if you supply known antibody you are hunting antigen; if you supply known antigen you are hunting antibody.

Marking guide: 2 marks per method group. Distinguishing direct from indirect agglutination by what each detects is the most commonly examined point.
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47 How are immune cells evaluated? 6 marks

Immune cells are assessed along two axes: number (normal range, higher, lower) and function (normal, stronger, deficient). Both are needed, because a normal count can conceal defective function.

TestMeasures
Lymphocyte transformation testT-cell function — PHA stimulation converts small lymphocytes into lymphoblasts over 48–72 hours
E-rosette testT cells — CD2 is the sheep-erythrocyte receptor
Phagocytosis assayPhagocyte function
Skin test / OT testType I hypersensitivity (30 min) or cell-mediated immunity (24–48 h)

The clinical importance of the function axis is shown by the tuberculin test: a negative result may mean no exposure — or that the patient is immunodeficient and cannot mount the response at all.

Marking guide: 2 marks for the number/function framework, 1 per named test with what it measures.
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Unit 17 · Immunotherapy
48 Classify immunotherapy and give examples of each category. 6 marks

Definition. The treatment of a disease with therapeutic agents that potentiate or inhibit the immune response.

ClassificationCategoriesExamples
By directionImmunopotentiation / immunosuppressionVaccines and cytokines / anti-lymphocyte serum, anti-CD3 mAb
By specificitySpecific / non-specificVaccine against one pathogen / adjuvants, BCG
By what is givenActive (antigen) / passive or adoptive (immune response products)Toxoid, recombinant and DNA vaccines / antitoxin, gamma globulin, monoclonal antibody

Antigen-based (active): purified antigen, synthetic peptide–carrier conjugate, recombinant antigen (HBsAg in yeast), DNA vaccine, recombinant virus vector.
Antibody-based (passive): antitoxin, gamma globulin, anti-viral serum, anti-lymphocyte serum; monoclonal antibodies including engineered (chimeric, humanized, single-chain, bi-specific) and checkpoint blockade (CTLA-4, PD-1, PD-L1).
Cytokine-related: supplementation (IFN-α, IFN-β, IL-2, CSF, EPO) and antagonism (anti-TNF mAb, IL-1ra).

Marking guide: 2 marks for the three classifications, 4 for examples across the antigen-, antibody- and cytokine-based groups. Noting that immunotherapy includes suppression is expected.
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49 Compare recombinant protein vaccines and DNA vaccines. 6 marks
Recombinant protein vaccineDNA vaccine
What is givenPurified antigen protein made in bacteria or yeastPlasmid carrying the gene for the antigen
Where antigen appearsOutside the cell — exogenousInside the host's own cells — endogenous
Presentation pathwayMHC class II onlyMHC class I (and class II)
Immunity generatedPrimarily humoral; no cell-mediated responseBoth humoral and cellular
AdvantagesLarge amounts cheaply; exotoxins can be genetically inactivated; antigen can be made more immunodominantHeat-stable, no cold chain; cheap; long duration; usable in neonates despite maternal antibody; multiple vaccines together
DisadvantagesHumoral memory needs several dosesForeign DNA might integrate and transform the cell; anti-DNA antibodies and autoimmunity

The organising point: the compartment in which the antigen appears determines the presentation pathway, which determines the kind of immunity you get. That is why DNA vaccines are pursued for viruses and tumours, where CTLs are needed.

Marking guide: 1 mark per row. The class I / class II contrast and its consequence for cell-mediated immunity is the discriminating point.
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50 Describe antibody-based immunotherapy. 6 marks

1 · Immune serum (antiserum). Antitoxins for exotoxin-induced disease (tetanus, diphtheria); serum or placental gamma globulin to prevent viral infection (measles, hepatitis) and treat hypogammaglobulinaemia; anti-viral serum for measles and rabies; anti-lymphocyte serum to inhibit graft rejection and treat autoimmune disease.

2 · Monoclonal antibodies. Anti-CD3 and anti-CD4 to prevent graft rejection and GVHD; anti-IL-1 and anti-TNF for rheumatoid arthritis and chronic inflammation; antibody-guided therapy — radioimmunotherapy (¹³¹I, ¹²⁵I), chemotherapy conjugates, and immunotoxins (ricin, diphtheria toxin).

3 · Engineered monoclonal antibodies. Chimeric (mouse V + human C), humanized, single-chain (VH–linker–VL) and bi-specific — each step reducing the mouse content that would otherwise act as a xenogeneic antigen.

4 · Immune checkpoint blockade. Monoclonal antibodies against CTLA-4, PD-1 and PD-L1 (also BTLA, VISTA, TIM3, LAG3), used in tumour immunotherapy to release the brake on T cells. Characteristic toxicity is autoimmune, because checkpoints normally prevent autoimmunity.

Marking guide: 1.5 marks per group. Naming the engineered-antibody types and the checkpoint targets secures full marks; explaining why antibodies are engineered is the discriminating detail.
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