Unit 21 Question Bank
The overall determinant of the rate of de novo purine nucleotide biosynthesis is the concentration of PRPP, which depends on the availability of ribose 5-phosphate — from the pentose phosphate pathway — and on PRPP synthase, feedback inhibited by AMP, ADP, GMP and GDP.
Its role differs between the two pathways: in purine synthesis it is the scaffold on which the ring is built; in pyrimidine synthesis it joins only after the ring is complete.
Because it is common to both, PRPP synthase is the pivot of the coordinated, mole-for-mole regulation of purine and pyrimidine synthesis.Harper's ch.33, pp.350–354
Mechanism 1 — phosphoribosylation by PRPP: Pu + PRPP → Pu-RP + PPi, catalysed by adenine phosphoribosyltransferase (adenine → AMP) and hypoxanthine-guanine phosphoribosyltransferase (HGPRT) (hypoxanthine → IMP, guanine → GMP).
Mechanism 2 — phosphoryl transfer from ATP: Pu-R + ATP → PuR-P + ADP, catalysed by adenosine kinase and deoxycytidine kinase.
Significance: liver is the major site of de novo synthesis and supplies purines to tissues incapable of it — brain (low PRPP glutamyl amidotransferase) and erythrocytes and polymorphonuclear leukocytes (cannot make 5-phosphoribosylamine). Failure of HGPRT causes Lesch-Nyhan syndrome.Harper's ch.33, p.350
Why humans are susceptible: humans lack uricase, which in other mammals converts uric acid to the soluble product allantoin, so uric acid is the end product of purine catabolism in humans. Its pKa is 5.8 — relatively insoluble as the free acid at acidic pH, more soluble as sodium urate near neutrality, which explains both uric acid stones in acid urine and deposition in cool peripheral joints.
Causes: various genetic defects in PRPP synthase — elevated Vmax, increased affinity for ribose 5-phosphate, or resistance to feedback inhibition — cause overproduction; but most cases of gout reflect abnormalities in renal handling of uric acid. Secondary hyperuricemia accompanies cancer, psoriasis and von Gierke disease.
Treatment: allopurinol, which inhibits xanthine oxidase, so that the more soluble hypoxanthine and xanthine are excreted instead.Harper's ch.33, pp.354–355
Mechanism of the overproduction: salvage normally consumes PRPP; when HGPRT fails, the accompanying rise in intracellular PRPP results in purine overproduction. The patient therefore both fails to recycle purines and makes too many new ones.
The neurological features follow from the fact that brain has a low level of PRPP glutamyl amidotransferase and depends in part on exogenous purines. Causative mutations include deletions, frameshift mutations, base substitutions and aberrant mRNA splicing.Harper's ch.33, pp.354–355
Two mechanisms: retention hyperbilirubinemia, from overproduction (unconjugated), and regurgitation hyperbilirubinemia, from reflux into the bloodstream because of biliary obstruction (conjugated).
Three anatomical categories:
• Prehepatic — haemolytic anaemias; ↑ indirect (unconjugated), urine urobilinogen increased, urine bilirubin ABSENT (acholuric)
• Hepatic — hepatitis, cirrhosis; both fractions rise; ALT and AST markedly elevated
• Posthepatic — gallstone in the common bile duct, cancer of the head of the pancreas; ↑ direct (conjugated), urine bilirubin PRESENT (choluric), urine urobilinogen absent, pale stools, alkaline phosphatase elevated
Only unconjugated bilirubin crosses the blood-brain barrier — hence kernicterus; only conjugated bilirubin appears in urine.Harper's ch.31, pp.332–334
It is the second of the three stages of hepatic bilirubin catabolism: uptake by the liver, conjugation with glucuronic acid, and secretion in the bile — of which secretion, via the multispecific organic anion transporter (MOAT), is probably rate-limiting.
Clinically: conjugated bilirubin is “direct” bilirubin (assayed without added methanol); indirect = total − direct = unconjugated. Defects of the transferase give Gilbert syndrome (~30% activity retained, harmless), Crigler-Najjar type I (complete absence, over 20 mg/dL, often fatal within 15 months, no response to phenobarbital) and type II (partial, responds to phenobarbital).Harper's ch.31, pp.331–333
Where, and from what
Purine nucleotides are synthesised in the cytosol. They are formed from amphibolic intermediates and are thus dietarily nonessential. The defining structural feature is that the ring is assembled directly ON the ribose — PRPP serves as the scaffold, in contrast to pyrimidine synthesis where the ring is completed first.
The sources of the ring atoms
- Glycine — C4, C5 and N7, an entire fragment
- Glutamine — N3 and N9
- Aspartate — N1
- CO₂ — C6
- N¹⁰-formyl-tetrahydrofolate — C2 and C8
Hence Harper's remark that several reactions of IMP biosynthesis require folate derivatives and glutamine — consequently, antifolate drugs and glutamine analogs inhibit purine biosynthesis.
The pathway
Ribose 5-phosphate + ATP → PRPP (PRPP synthase). PRPP + glutamine → 5-phosphoribosylamine — the committed step, catalysed by PRPP glutamyl amidotransferase. Eleven further reactions, several carried out by multifunctional catalysts whose adjacent active sites channel the intermediates, build the ring to give inosine monophosphate (IMP).
IMP is a precursor both of AMP and of GMP:
- To AMP: IMP + aspartate + GTP → adenylosuccinate (adenylosuccinate synthase) → AMP + fumarate. Aspartate provides the 6-amino group.
- To GMP: IMP + NAD⁺ → XMP (IMP dehydrogenase) → GMP, using glutamine and ATP. Glutamine provides the 2-amino group.
Regulation — three levels
The rationale is explicit: biosynthesis of IMP is energetically expensive — in addition to ATP, glycine, glutamine, aspartate and reduced tetrahydrofolate derivatives all are consumed — so it is of survival advantage to closely regulate purine biosynthesis in response to varying physiologic need.
- 1 · PRPP supply. The overall determinant of the rate is the concentration of PRPP. PRPP synthase is feedback inhibited by AMP, ADP, GMP and GDP.
- 2 · The committed step. AMP and GMP feedback inhibit PRPP glutamyl amidotransferase.
- 3 · The branch point. AMP inhibits adenylosuccinate synthase; GMP inhibits IMP dehydrogenase. Further, AMP synthesis requires GTP and GMP synthesis requires ATP — cross-regulation that balances the biosynthesis of purine nucleoside triphosphates by decreasing the synthesis of one when there is a deficiency of the other. AMP and GMP also inhibit HGPRT.
Coordination with pyrimidines
Purine and pyrimidine biosynthesis parallel one another quantitatively, mole for mole — as they must, since DNA and RNA pair them 1:1. PRPP synthase, which forms a precursor essential for both processes, is feedback inhibited by both purine and pyrimidine nucleotides.
Salvage — the cheaper alternative
Salvage reactions require far less energy than de novo synthesis. Pu + PRPP → Pu-RP + PPi, by APRT and HGPRT; or Pu-R + ATP → PuR-P + ADP, by adenosine kinase. Liver is the major site of de novo synthesis and supplies purines for tissues incapable of it — brain, erythrocytes and polymorphonuclear leukocytes.
Formation
Catabolism of the heme ring, initiated by the mitochondrial enzyme heme oxygenase, produces the linear tetrapyrrole biliverdin; subsequent reduction of biliverdin in the cytosol forms bilirubin. This occurs in the reticuloendothelial system; the iron is released and reutilized and the globin degraded to amino acids.
Since 1 g of hemoglobin yields about 35 mg of bilirubin, human adults form 250 to 350 mg of bilirubin per day — principally from haemoglobin, but also from ineffective erythropoiesis and other heme proteins. The process can be watched: the purple colour of the heme in a hematoma slowly converts to the yellow pigment of bilirubin.
Transport
Bilirubin is only sparingly water-soluble, but bilirubin bound to serum albumin is readily transported to the liver. Albumin's high-affinity site binds approximately 25 mg per 100 mL of plasma; beyond that, bilirubin is loosely bound, detaches and diffuses into tissues. Antibiotics and certain other drugs can compete with and displace bilirubin from the high-affinity site — clinically important in the newborn.
Hepatic handling — three stages
- Uptake at the sinusoidal surface by a large capacity, saturable facilitated transport system; bilirubin then binds cytosolic glutathione S-transferase (ligandin), preventing its return to the blood.
- Conjugation by bilirubin UDP-glucuronosyl transferase of the endoplasmic reticulum, transferring two glucuronosyl moieties from UDP-glucuronate to give bilirubin diglucuronide. This is what makes the pigment water-soluble.
- Secretion into bile by the multispecific organic anion transporter (MOAT), an ATP-binding cassette transporter — probably rate-limiting for the entire process.
In the gut
Bacterial β-glucuronidases remove the glucuronosyl moieties, and reduction by the fecal flora forms colorless tetrapyrroles called urobilinogens. Small portions are reabsorbed and reexcreted via the enterohepatic urobilinogen cycle; most are oxidized in the colon to coloured urobilins and excreted in the feces.
The two solubilities — the key to everything clinical
Due to its hydrophobicity, only unconjugated bilirubin can cross the blood-brain barrier, so encephalopathy (kernicterus) occurs only with unconjugated bilirubin. Because of its water-solubility, only conjugated bilirubin can appear in urine, so choluric jaundice occurs only in regurgitation hyperbilirubinemia.
The laboratory follows the same division: “direct” bilirubin (assayed without added methanol) is bilirubin glucuronide — conjugated; “indirect” = total − direct = unconjugated.
Jaundice
Hyperbilirubinemia exceeds 1 mg/dL (17 μmol/L); at 2 to 2.5 mg/dL bilirubin diffuses into the tissues, which turn yellow — jaundice or icterus.
| Prehepatic (haemolysis) | Hepatic (hepatitis) | Posthepatic (obstruction) | |
|---|---|---|---|
| Serum bilirubin | ↑ Indirect | ↑ both | ↑ Direct |
| Urine urobilinogen | Increased | Decreased if micro-obstruction | Absent |
| Urine bilirubin | Absent (acholuric) | Present if micro-obstruction | Present (choluric) |
| Fecal urobilinogen | Increased | Decreased | Trace to absent, pale stools |
| Enzymes | — | ALT, AST ↑↑ | Alkaline phosphatase ↑ |
The common causes of posthepatic obstruction are a stone in the common bile duct and cancer of the head of the pancreas.
Inherited and neonatal disorders
- Neonatal “physiologic jaundice” — accelerated hemolysis plus an immature hepatic system for uptake, conjugation and secretion. If unconjugated bilirubin exceeds the albumin binding capacity (20–25 mg/dL) it penetrates the blood-brain barrier, causing kernicterus and mental retardation. Treated by phototherapy with blue light, which converts some to biliary-excretable derivatives, and by phenobarbital.
- Gilbert syndrome — about 30% of transferase activity retained; harmless.
- Crigler-Najjar type I — complete absence of the transferase; over 20 mg/dL, brain damage, often fatal within the first 15 months; phenobarbital has no beneficial effect. Type II retains some activity and responds to large doses of phenobarbital.
- Dubin-Johnson syndrome — conjugated hyperbilirubinemia from a mutation in the secretion protein; benign. Rotor syndrome is similarly benign and conjugated.
- Toxic hyperbilirubinemia — chloroform, carbon tetrachloride, acetaminophen, hepatitis virus, cirrhosis, Amanita mushroom poisoning.